Publications

2018

  • Baker, E.A.G., Wegrzyn, J.L., Sezen, U.U., Falk, T., Maloney, P.E., Vogler, D.R., Delfino-Mix, A., Jensen, C., Mitton, J., Wright, J., Knaus, B., Rai, H., Cronn, R., Gonzalez-Ibeas, D., Vasquez-Gross, H.A., Famula, R.A., Liu, J., Kueppers, L.M., Neale, D.B. (2018). Comparative Transcriptomics Among Four White Pine Species. G3: Genes|Genomes|Genetics. doi:10.1534/g3.118.200257. Full Text.
  • Stevens, K. A., Woeste, K., Chakraborty, S., Crepeau, M. W., Leslie, C. A., Martínez-García, P. J., Puiu, D., Romero-Severson, J., Coggeshall, M., Dandekar, A.M., Kluepfel, D., Neale, D.B., Salzberg, S.L., & Langley, C.H. (2018). Genomic Variation Among and Within Six Juglans Species. G3: Genes, Genomes, Genetics, g3-200030.
  • Vangestel, C., Eckert, A.J., Wegrzyn, J.L., St. Clair, J.B., & Neale, D.B. (2018). Linking phenotype, genotype and environment to unravel genetic components underlying cold hardiness in coastal Douglas-fir (Pseudotsuga menziesii var. menziesii). Tree Genetics & Genomes14(1), 10. Full Text.

2017

  • ĆalićI., KochJ., CareyD., Addo-QuayeC., Carlson, J.E., Neale, D.B. (2017). Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.). BMC Genomics, 18:547. Full Text.
  • Carrasco, A., Wegrzyn, J.L., Durán, R., Fernández, M., Donoso, A., Rodriguez, V., Neale, D.B., Valenzuela, S. (2017) Expression profiling in Pinus radiata infected with Fusarium circinatum. Tree Genetics and Genomes, 13(2):46-46. Full Text.
  • Cronn, R., DolanP.C., JogdeoS., WegrzynJ.L., NealeD.B., St. Clair, J.B., Denver, D.R. (2017). Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles. BMC Genomics, 18:558. Full Text.
  • Di Pierro, E.A., Mosca, E., González-Martínez, S.C., Binelli, G., Neale, D.B., La Porta, N. (2017). Adaptive variation in natural Alpine populations of Norway spruce (Picea abies [L.] Karst) at regional scale: Landscape features and altitudinal gradient effects. Forest Ecology and Management, 405:350-359. Full Text.
  • Grivet, D., Avia, K., Vaattovaara, A., Eckert, A. J., Neale, D. B., Savolainen, O., & González‐Martínez, S. C. (2017). High rate of adaptive evolution in two widespread European pines. Molecular Ecology, 26(24):6857-6870. Full Text.
  • Lind, B.M., Friedline, C.J., Wegrzyn, J.L., Maloney, P.E., Vogler, D.R., Neale, D.B., Eckert, A.J. (2017) Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Englm.) across fine spatial scales of the Lake Tahoe Basin, USA. Molecular Ecology, 26(12):3168–3185. Full Text.
  • Martínez-García, P.J., Famula, R.A., Leslie, C., McGranahan, G.H., Famula, T.R., Neale, D.B. (2017). Predicting breeding values and genetic components using generalized linear mixed models for categorical and continuous traits in walnut (Juglans regia). Tree Genetics and Genomes, 13:109. Full Text.
  • Mosca, E., Di Pierro, E. A., Budde, K. B., Neale, D. B., & González‐Martínez, S. C. (2017). Environmental effects on fine‐scale spatial genetic structure in four Alpine keystone forest tree species. Molecular Ecology, 27(3):647-658. Full Text.
  • Neale, D.B., Martinez-Garcia, P.J., De La Torre, A.R., Montanari, S., Wei, X. (2017) Novel Insights into Tree Biology and Genome Evolution as Revealed Through Genomics. Annual Review of Plant Biology, 68(6):1-1. Full Text.
  • NealeD.B., McGuireP.E., WheelerN.C., StevensK.A., CrepeauM.W., CardenoC., ZiminA.V. PuiuD., PerteaG.M., SezenU. U., CasolaC., KoralewskiT.E., PaulR., Gonzalez-IbeasD., ZamanS., CronnR., YandellM., C. HoltLangleyC.H., YorkeJ.A., Salzberg, S.L., Wegrzyn, J.L.(2017). The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. G3: Genes|Genomes|Genetics, 
  • Vázquez-Lobo, A., De La Torre, A. R., Martínez-García, P.J., Vangestel, C., Wegrzyn, J.L., Ćalić, I., Burton, D., Davis, D., Kinloch, B., Vogler, D., Neale, D.B. (2017) Finding loci associated to partial resistance to white pine blister rust in sugar pine (Pinus lambertiana Dougl.). Tree Genetics and Genomes, 13:108. Full Text.
  • Zimin, A.V., Stevens, K.A., Crepeau, M.W., Puiu, D., Wegrzyn, J.L., Yorke, J.A., Langley, C.H., Neale, D.B., Salzberg, S.L. (2017) An Improved Assembly of the Loblolly Pine Mega-Genome Using Long-Read Single-Molecule Sequencing. Giga Science, 6(1):1-4. Full Text.

2016

  • Calic I., Bussotti F., Martinez-García P. J., Neale D. B., (2016) Recent landscape genomics studies in forest trees–what can we believe?. Tree Genetics and Genomes. 12(3):1-7. Full TextSupplemental.
  • Vangestel, C., Vázquez-Lobo, A., Martínez-García, P.J., Calic, I., Wegrzyn, J.L., Neale, D.B. (2016) Patterns of neutral and adaptive genetic diversity across the natural range of sugar pine (Pinus lambertiana Dougl.) . Tree Genetics and Genomes. 12(3):51-51. Full Text.
  • Gonzalez-Ibeas, D., Martinez-Garcia, P.J., Famula, R.A., Delfino-Mix, A., Stevens, K.A., Loopstra, C.A., Langley, C.H., Neale, D.B., Wegrzyn, J.L. (2016) Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). G3: Genes|Genomes|Genetics. 1(1):3787-3802. Full Text.
  • DiPierro E.A., Mosca E., Rocchini D., Binelli G., Neale D.B., La Porta N. (2016) Climate-related adaptive genetic variation and population structure in natural stands of Norway spruce in the South-Eastern Alps. Tree Genetics and Genomes. 12(2):1-16. Full Text.
  • Guerra F.P., Richards J.H., Fiehn O., Famula R., Stanton B.J., Shuren R., Sykes R., Davis M.F., Neale D.B. (2016) Analysis of the genetic variation in growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa provances. Tree Genetics and Genomes. 12(6):1-16.
  • Xiong, J.S., McKeand, S.E., Isik, F., Wegrzyn, J., Neale, D.B., Zeng, Z., da Costa e Silva, L., Whetten, R.W. (2016) Quantitative Trait Loci Influencing Forking Defects in an Outbred Pedigree of Loblolly Pine. . 17(1):138-138. Full Text.

Publications by Year

Recent | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 |  2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 | 1990 | 1989 | 1988 | 1986 | 1985 | 1984 | 1981